FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12892335
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC397450.3082839532171635No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT310440.24079423936781041No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC269670.20917079799741473No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG265610.20602163998996303No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC242570.18815055612501536No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG237510.1842257434359253No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA221220.17159032867203652No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT212520.16484213294178285No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT189890.1472890674963069No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC184640.14321688041770556No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT179130.13894302312187823No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT149140.11568113921954402No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA148860.11546395590868529No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG147920.11473484050794523No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA147830.11466503158659778No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC146700.11378854179634644No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC144400.11200453602857821No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT136660.10600096879269737No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG133930.10388343151182466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)