FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11731053
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1145816097.67375528863437No Hit
NTCCGC646610.5511951910881316No Hit
GTCTGC246700.21029655223618887No Hit
GTCCGT184350.15714701825999763No Hit
GTCCTC161210.13742159378190516No Hit
TTCCGC153670.1309942082778076No Hit
GTTCGC144450.12313472626881833No Hit
GTCCAC142870.12178787360350345No Hit
GTCCCC137250.11699716981928221No Hit
GTCCGA130930.11160975915802272No Hit
ATCCGC129290.11021176018896173No Hit
GACCGC122340.10428731333836784No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)