FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11729872
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1146304997.72526929535123No Hit
NTCCGC621790.5300910359465133No Hit
GTCTGC249840.21299465160404138No Hit
GTCCGT181420.1546649443403986No Hit
GTCCTC155280.13237996117945705No Hit
TTCCGC151590.12923414680057888No Hit
GTTCGC140420.11971145124175268No Hit
GTCCAC140340.11964324930399922No Hit
GTCCCC135940.11589214272755917No Hit
ATCCGC128550.10959198872758373No Hit
GTCCGA127220.10845813151243253No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)