FastQCFastQC Report
Wed 11 May 2022
EGAF00004828525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11729872
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC262200.22353185098695025No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC230540.19654093412102025No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT219310.18696708710887894No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG182610.15567944816448126No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA181440.15468199482483697No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC175990.1500357378153828No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA159540.13601171436482853No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT150680.12845834975863335No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG144790.12343698209153518No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT142010.1210669647546026No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT141360.12051282401035579No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC128980.10995857414300854No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA123120.10496278220256794No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC122450.10439159097388276No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT121990.10399942983180038No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC121810.10384597547185512No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT120070.10236258332571745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)