FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11780640
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1152840197.85886844857326No Hit
NTCCGC572170.48568668595254594No Hit
GTCTGC241210.2047511849950427No Hit
GTCCGT174130.1478103057219302No Hit
TTCCGC153950.13068050632223716No Hit
GTCCTC149110.12657207078732566No Hit
GTTCGC143980.12221746866044629No Hit
GTCCCC136420.11580016026293988No Hit
GTCCAC126180.10710793301552378No Hit
GTCCGA120960.10267693436010268No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)