FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11780640
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC264130.22420683426367327No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC227680.19326624020426733No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT219690.1864839261703948No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG184210.15636671691860543No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA181090.15371830392915836No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC177100.15033139116380773No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA163490.13877853834766193No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT151430.12854140352306836No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT146400.12427168642790205No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG144970.12305783047440547No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT143340.12167420445748278No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC128930.1094422713876326No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC124730.10587710005568458No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC122770.10421335343410885No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA122750.10419637642776623No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT122690.10414544540873841No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT122000.10355973868991838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)