FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10760890
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1049401797.5199727903547No Hit
NTCACG590260.5485234028040431No Hit
ATTACG239910.22294624329400264No Hit
ATCATG229310.21309575694947164No Hit
ATCACT205690.19114589964212997No Hit
ATCACC204600.19013297227273954No Hit
ATCCCG196330.1824477343416762No Hit
ATCACA175250.16285827659236365No Hit
CTCACG121620.11302039143602435No Hit
ATCAAG112530.10457313475000674No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)