FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10757383
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1049538697.56449128937771No Hit
NTCACG570820.5306309164598861No Hit
ATTACG234530.21801770932577189No Hit
ATCATG231580.21527540666721637No Hit
ATCACC204090.18972086426596507No Hit
ATCACT196270.18245143823548907No Hit
ATCCCG190200.1768088019177155No Hit
ATCACA172750.1605873844967684No Hit
CTCACG122460.1138380961243083No Hit
ATCAAG108720.10106547289429035No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)