FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12554219
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGA1231229998.07299840794556No Hit
NCTTGA704040.5607995208622695No Hit
ACTTGC316180.251851588696995No Hit
ACTTTA159250.1268497865139998No Hit
ATTTGA153720.12244489282845869No Hit
ACTTCA130910.10427570205681454No Hit
CCTTGA127300.10140017471417379No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)