FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12522711
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGA1228906098.13418196746694No Hit
NCTTGA666980.5326163000966803No Hit
ACTTGC299570.23922136348910392No Hit
ATTTGA152960.1221460752388201No Hit
ACTTTA152760.12198636541240951No Hit
ACTTCA126170.1007529439911214No Hit
CCTTGA125870.10051337925150551No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)