FastQCFastQC Report
Wed 8 May 2024
EGAF00004828550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12002190
Total Bases72 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1173128097.74282860044708No Hit
NAGCTT636480.5303032196624117No Hit
TAGCTA238230.19848877579841678No Hit
TAGTTT224120.18673258796936226No Hit
TAGCTC195770.16311189874514567No Hit
TATCTT195360.1627702944212681No Hit
TAGCCT194250.16184546320296547No Hit
TAACTT171970.14328218433469225No Hit
TAGCAT126030.10500583643485065No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)