FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11403052
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1116712597.9310188184707No Hit
NGCTAC633360.5554302479722095No Hit
GGCTCC214190.18783567767646767No Hit
AGCTAC180170.15800155958246967No Hit
GTCTAC173070.151775156335339No Hit
GGCTAA152170.13344672987547546No Hit
GGCTAT141310.12392296378197695No Hit
TGCTAC119010.10436679583676371No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)