FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11398154
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1116790297.97991850259261No Hit
NGCTAC608820.5341391246336906No Hit
GGCTCC202600.1777480809611802No Hit
AGCTAC177950.15612177199922023No Hit
GTCTAC168930.1482082098557363No Hit
GGCTAA152650.1339251952553019No Hit
GGCTAT141380.12403762925119277No Hit
TGCTAC115240.10110409106597437No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)