FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11438591
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1122216698.1079400426154No Hit
NGCTAC553300.48371342239616744No Hit
GGCTCC203370.17779287676253133No Hit
GTCTAC167010.14600574493834076No Hit
AGCTAC157120.13735957514347702No Hit
GGCTAA149010.13026954106497907No Hit
GGCTAT135400.1183712224696206No Hit
TGCTAC117630.10283609231241855No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)