FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11438591
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA296110.25886929605228476No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT156430.13675635399499816No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT134590.11766309329531933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)