FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14101530
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1375926697.57285911528749No Hit
NTGGCC772960.5481391026363805No Hit
GTGGCT536050.3801360561584452No Hit
GTGGTC232500.16487572625098126No Hit
GTGTCC221880.15734462856158163No Hit
GTTGCC214560.15215370247058296No Hit
TTGGCC181730.1288725407810358No Hit
ATGGCC165580.11741988280704292No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)