FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14042513
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1370410997.59014643604033No Hit
NTGGCC742830.5289865140235227No Hit
GTGGCT539900.3844753428392767No Hit
GTGGTC227220.1618086449341368No Hit
GTGTCC221240.15755014789731722No Hit
GTTGCC216620.1542601384809115No Hit
TTGGCC180890.12881597474753986No Hit
ATGGCC162970.1160547261020873No Hit
GTGACC140640.10015301392279287No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)