FastQCFastQC Report
Wed 8 May 2024
EGAF00004828571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14081941
Total Bases84.4 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1375648097.68880582584461No Hit
NTGGCC682750.4848408326664627No Hit
GTGGCT539390.38303668507061633No Hit
GTGGTC226510.16085140535669054No Hit
GTTGCC219520.15588760100613971No Hit
GTGTCC215210.1528269433879889No Hit
TTGGCC184270.13085554044005723No Hit
ATGGCC151260.10741416968015986No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)