FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12348837
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1187791796.18652347585444No Hit
GTTTTG1626581.3171928660164516No Hit
NTTTCG672450.5445452069696928No Hit
GTTTCC270000.2186440715024419No Hit
GTTTCA219270.1775632798457053No Hit
GTTTCT215480.17449416491609696No Hit
GTTTAG182790.14802203640715317No Hit
GGTTCG181230.1467587595495835No Hit
GATTCG177830.14400546383436755No Hit
TTTTCG177430.14368154669140099No Hit
GTTCCG171430.13882278954690228No Hit
GCTTCG159060.1288056519006608No Hit
ATTTCG139220.11273936160951838No Hit
GTTTGG126600.10251977574892274No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)