FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12310919
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1183640696.14559238022767No Hit
GTTTTG1644151.3355217429340571No Hit
NTTTCG644930.5238682831070531No Hit
GTTTCC273800.22240419257083893No Hit
GTTTCA222890.18105065917499744No Hit
GTTTCT219820.1785569379507736No Hit
GTTTAG189920.15426955534351253No Hit
GGTTCG186960.15186518569409807No Hit
GATTCG180450.14657719703947367No Hit
TTTTCG175040.14218272413294247No Hit
GTTCCG173920.14127296264397482No Hit
GCTTCG158900.1290724112472838No Hit
ATTTCG139280.11313533944947571No Hit
GTTTGG132890.10794482524009784No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)