FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12310919
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC526670.4278072173165951No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC475290.38607190901020466No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT376410.30575296612706165No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG267360.21717306400927502No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA235280.19111489564670192No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA222330.1805957784305136No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT221440.17987284296160183No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT218810.1777365280366153No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC208900.16968676343333913No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA207550.16859017592431566No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT202030.16410635144297514No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG192800.15660894202942932No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC183590.14912777835675795No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG182910.14857542316702757No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT181760.1476412930667483No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT179490.1457974014775014No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC176080.1430275026584124No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA173350.1408099590290538No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC168550.13691098121919248No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT167930.1364073632520854No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT155360.1261969151125111No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA153690.12484039574949685No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG141120.11462994760992255No Hit
CTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCAT133630.10854591765245146No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA131020.10642584846833937No Hit
GCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTC130320.10585724753773461No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC123140.10002502656381704No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)