FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12431737
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1195840296.192527238953No Hit
GTTTTG1661531.3365228044962663No Hit
NTTTCG591950.4761603306118847No Hit
GTTTCC294040.23652366519658516No Hit
GTTTCA226140.1819053926253427No Hit
GTTTCT224350.18046552947508462No Hit
GTTTAG199250.1602752696586165No Hit
GGTTCG189290.15226351715773911No Hit
TTTTCG180460.14516072854501347No Hit
GATTCG174500.140366547329629No Hit
GTTCCG169740.1365376374998924No Hit
GCTTCG157180.12643446366344463No Hit
GTTTGG135890.1093089404964085No Hit
ATTTCG128950.10372645431607828No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)