FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12431737
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC529150.42564446142964574No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC481910.38764494454797427No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT372600.29971676524366625No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG269220.21655863537010153No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA242450.19502503954194012No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA226560.18224323761031946No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT224010.18019203591581773No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT221680.17831780064201808No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA213630.17184243842996355No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC213260.17154481308605546No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT206180.165849711910733No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG193340.1555213080843007No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT187530.1508477857921222No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC186500.15001926118610778No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG186270.14983425083719193No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT182180.14654428419777543No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA176380.14187880583381068No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC174290.14019762483714063No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT168440.13549192683210723No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC167110.1344220843796808No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT157550.12673208900735272No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA155410.125010688369614No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG143310.11527753523099789No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA134480.10817474661827226No Hit
CTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCAT132270.1063970384830374No Hit
GCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTC130600.10505370247134412No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC126820.10201309760655328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)