FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12100978
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGC1185289497.94988471179768No Hit
NTAGGC669670.5534015515109605No Hit
TTAGGA205440.16977140194784257No Hit
TTAGGT180840.14944246655105065No Hit
TTAGTC161330.1333198027465218No Hit
TTAGCC154060.12731202387112842No Hit
TTATGC148050.12234548315020488No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)