FastQCFastQC Report
Wed 8 May 2024
EGAF00004828585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12100978
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC434760.3592767460613514No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC372900.3081569109538088No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT296400.2449388801467121No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG218600.18064655600563856No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC198030.16364792994417476No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA197120.16289592461039099No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT185350.1531694380404625No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT178090.14716992295994588No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA177490.1466740952673412No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT173580.14344295147053404No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT172160.14226949259803628No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA172010.14214553567488514No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT165120.13645178100480804No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC154120.1273616066403889No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG153090.12651043576808418No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG152410.12594849771646555No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC146130.12075883453386992No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT139880.11559396273590448No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA138220.11422217278636489No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT129260.10681781257680163No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC128650.10631372108932022No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA125040.10333049113881539No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG121290.10023156806003614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)