FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12075348
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC436390.3613891707303177No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC370360.3067075168351256No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT292800.24247748387872547No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG217020.1797215285224078No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC200610.16613185806322103No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA198090.16404496168557625No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT184760.15300594235462198No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT179270.1484594895318959No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA175990.14574321170702492No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT175180.1450724235856391No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA168790.13978065062803988No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT168760.13975580662354412No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT162720.1347538803850622No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC153360.12700255098238164No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG152790.126530514896962No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG148780.12320969962936058No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC142780.11824089873020636No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT141370.11707323051890511No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA134150.11109410677025623No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT131750.10910658641059455No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC128060.10605077385761472No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA127720.1057692084733293No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG121910.10095775293598164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)