FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12133208
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1184639997.63616514280477No Hit
NATCAG671010.5530359324590826No Hit
GATTAG340390.28054410671934416No Hit
GATCCG237110.19542234831876285No Hit
GATCAA211840.1745952101043681No Hit
GATCAT145680.1200671743202622No Hit
GAACAG144360.11897925099446083No Hit
GATAAG123330.10164665437203417No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)