FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12118264
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1183644597.67442762428678No Hit
NATCAG640600.5286235718251393No Hit
GATTAG334600.27611215599858197No Hit
GATCCG231330.19089367916064545No Hit
GATCAA207940.1715922346633148No Hit
GAACAG145920.1204132869196446No Hit
GATCAT139360.1149999702927746No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)