FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12170894
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1190783397.83860577538512No Hit
NATCAG590630.48528070329098255No Hit
GATTAG332840.2734721048429146No Hit
GATCCG232210.19079124343700635No Hit
GATCAA194280.15962672914578008No Hit
GAACAG141760.11647459915434313No Hit
GATCAT123000.10106077663645743No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)