FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12015184
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1178063698.0479033862486No Hit
NGTACG669230.5569868925852488No Hit
CGTCCG235740.19620173939908034No Hit
CTTACG187500.15605254151746656No Hit
CGTACT169990.14147931484028875No Hit
TGTACG158710.13209119394259797No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)