FastQCFastQC Report
Wed 8 May 2024
EGAF00004828606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11979917
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG198320.16554371787383834No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT188780.15758039058200488No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC121900.10175362650676127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)