FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12045686
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCT1178945597.87284011886082No Hit
NTTCCT663060.5504543286285232No Hit
ATTCTT243610.2022383781214287No Hit
CTTCCT226880.18834958839206004No Hit
ATTCCC216400.1796493782089289No Hit
ATTTCT189920.15766640438742965No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)