FastQCFastQC Report
Wed 8 May 2024
EGAF00004828619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12671592
Total Bases76 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTGG1239187697.79257412959635No Hit
NAGTGG703120.554878976532704No Hit
GAGTGA196650.15518965572755183No Hit
GCGTGG186990.14756630421812825No Hit
GAGAGG183780.14503307871654958No Hit
GAGCGG171140.13505801007481932No Hit
GATTGG139520.11010455513403525No Hit
GAGGGG128130.10111594502095712No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)