FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12653159
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTGG1239633697.97028552316462No Hit
NAGTGG614790.48587866476664054No Hit
GAGTGA186980.14777337422220016No Hit
GCGTGG174400.13783119298508775No Hit
GAGAGG167810.13262300742447006No Hit
GAGCGG156750.12388210722713593No Hit
GATTGG130840.10340500739775735No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)