FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10768164
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1060892098.52115922454375No Hit
ATAGTG169910.15778920157605325No Hit
ACAGTT159510.14813110201516247No Hit
ACAGCG155190.14411927604371552No Hit
ACCGTG126780.11773594830093598No Hit
CCAGTG121730.11304619803338804No Hit
ACATTG113130.10505969262726682No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)