FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10776694
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1061631898.51182561182492No Hit
ATAGTG171230.15888917324737994No Hit
ACAGTT159990.14845925847017646No Hit
ACAGCG148710.13799222655853455No Hit
ACCGTG128920.11962852429511314No Hit
CCAGTG125190.11616735150872799No Hit
ACATTG115780.10743554563208346No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)