FastQCFastQC Report
Wed 8 May 2024
EGAF00004828636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10776694
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC254220.23589794792354687No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT226710.21037063871350525No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG196370.18221729224194358No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA173470.16096773277593296No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG167040.15500115341495266No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC163700.15190187268934238No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC161390.1497583581755221No Hit
CAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTAGAGGTCTCAAGAA126470.11735509981075828No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC124050.11510951317723228No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT117480.10901302384571743No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT114720.10645194156946464No Hit
CACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTATGGATGATTT114560.10630347303171085No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC113890.10568176102986686No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC112670.10454968842949423No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG110590.10261959743869502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)