FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11438849
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1123200798.19175862886205No Hit
GCCACT288090.2518522624085692No Hit
GCCCAT194060.16964993593323943No Hit
ACCAAT192550.16832987304929017No Hit
GCCAAA191420.16734201142090432No Hit
GCTAAT172390.15070572222782203No Hit
GTCAAT149950.1310883638729736No Hit
TCCAAT135390.11835981050191326No Hit
GACAAT131490.11495037656323638No Hit
GCCAAC123620.10807031371775255No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)