FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11461307
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1124749398.1344710511637No Hit
GCCACT294960.2573528481524838No Hit
ACCAAT198680.17334846715125946No Hit
GCCCAT196630.17155984042657613No Hit
GCCAAA195130.17025108916461273No Hit
GCTAAT173170.1510909706894685No Hit
GTCAAT153560.13398122919140024No Hit
TCCAAT140980.12300516860773383No Hit
GACAAT138310.12067559136143897No Hit
GCCAAC130460.11382645975716382No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)