FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12235600
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1203692698.3762627088169No Hit
CTTGTC354790.2899653470201706No Hit
CTTTTA152630.12474255451306025No Hit
CATGTA135900.11106933865114911No Hit
ATTGTA135540.11077511523750368No Hit
TTTGTA130260.10645983850403741No Hit
CTGGTA123750.10113929844061591No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)