FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12205620
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1200398098.34797412994998No Hit
CTTGTC352560.28885054589607084No Hit
CTTTTA150520.12332024100373433No Hit
ATTGTA138700.11363617743301857No Hit
CATGTA138450.1134313537534349No Hit
CTGGTA135480.11099804843998093No Hit
TTTGTA129050.10572998340108901No Hit
CCTGTA123880.10149422970729878No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)