FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12222713
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1201993198.34094116420799No Hit
CTTGTC353510.2892238408935888No Hit
CTTTTA150820.1233932270192387No Hit
ATTGTA142430.11652895719632785No Hit
CATGTA137910.1128309238709933No Hit
TTTGTA131010.1071856960070976No Hit
CTGGTA129700.10611392086192321No Hit
CCTGTA125790.10291495840571566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)