FastQCFastQC Report
Sun 15 May 2022
EGAF00004828655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11381421
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAA1117316998.17024605275563No Hit
GTGACA494150.43417249919847445No Hit
GTGAAC366260.3218051594787681No Hit
GTTAAA171120.15035029457218038No Hit
GTGCAA160700.1411950230116257No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)