FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11351465
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAA1114026198.13941196136358No Hit
GTGACA506960.44660314769943793No Hit
GTGAAC358830.3161089780041607No Hit
GTTAAA170970.15061492062918752No Hit
GTGCAA166720.14687091049481277No Hit
ATGAAA113530.1000135224836618No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)