FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15426644
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA1512821998.06552222246134No Hit
AGTTAA403650.2616576878289277No Hit
AGTCCA375970.2437147055445112No Hit
AGCCAA302050.1957976083456648No Hit
AGTCAC293960.19055343469389713No Hit
AGACAA292990.18992465243898804No Hit
AGGCAA268360.17395876899732696No Hit
CGTCAA196240.1272084842302707No Hit
ATTCAA160430.10399539912893563No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)