FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15352566
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA1504838698.0187025413211No Hit
AGTTAA403810.2630244351335145No Hit
AGTCCA386940.25203604400723634No Hit
AGCCAA314630.20493642561119751No Hit
AGACAA301830.19659905712178669No Hit
AGTCAC298240.19426068580327222No Hit
AGGCAA276570.180145781493465No Hit
CGTCAA201290.13111163306511758No Hit
ATTCAA162440.10580641698592924No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)