FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15450840
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA1514170297.99921557662884No Hit
AGTTAA404370.26171392623313683No Hit
AGTCCA389540.25211574257451375No Hit
AGCCAA314630.20363294163941895No Hit
AGACAA304780.19725788371376574No Hit
AGTCAC300290.19435189284207202No Hit
AGGCAA276850.17918119662102514No Hit
CGTCAA209930.13586963556673942No Hit
ATTCAA164480.10645375914836992No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)