FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7353196
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCC720225797.9473007383456No Hit
CGTTCC165170.22462341545091413No Hit
AGTTCT136800.18604155254395505No Hit
AGTTTC132770.1805609424799774No Hit
ATTTCC132330.17996256321740914No Hit
AGCTCC130830.1779226339131991No Hit
AGGTCC111380.15147155060194234No Hit
AGTTCA100120.13615848129167235No Hit
AGATCC88700.12062781952228664No Hit
GGTTCC85320.1160311788234667No Hit
AGTTAC84050.11430403867923554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)