FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12507936
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1228261898.19859967303958No Hit
CGCTGT281200.22481726801288396No Hit
CGACGT256110.2047580032389037No Hit
CGATGC173570.13876789903625986No Hit
CGAAGT156820.12537640103051376No Hit
CGATGA136260.10893883691122179No Hit
TGATGT130990.10472551186702588No Hit
CGTTGT130850.10461358292847038No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)