FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12483691
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1225269398.14960174839317No Hit
CGCTGT292700.23446591236518108No Hit
CGACGT259090.2075427852227358No Hit
CGATGC178100.14266613936535277No Hit
CGAAGT162240.12996156345106588No Hit
CGATGA141240.11313961551916016No Hit
CGTTGT140590.11261893617841069No Hit
CGAGGT131170.10507309096324155No Hit
TGATGT130830.1048007356157726No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)